Bioinformatics for Dummies

Book Description

Bioinformatics – the process of searching biological databases, comparing sequences, examining protein structures, and researching biological questions with a computer – is one of the marvels of modern technology that can save you months of lab work. And the most amazing part is that, if you know how, you can use highly sophisticated programs over the Internet without paying a dime and sometimes, without installing anything new on your own computer. All you need to know is how to use these technological miracles.

That's where Bioinformatics For Dummies comes in. If you want to know what bioinformatics is all about and how to use it without wading through pages of computer gibberish or taking a course full of theory, this book has the answers in plain English. You'll find out how to

Use Internet resources
Understand bioinformatics jargon
Research biological databases
Locate the sequences you need
Perform specific tasks, step by step

Written by two experts who helped develop the science, Bioinformatics For Dummies is all about getting things done. If you're just getting your feet wet, start at the beginning with a quick review of those necessary parts of microbiology and an overview of the tools available. If you already know what you want to do, you can go directly to a chapter that shows you how. Get the lowdown on

Researching and analyzing DNA and protein sequences
Gathering information from all published sources
Searching databases for similar sequences and acquiring information about gene functions through sequence comparisons
Producing and editing multiple sequence comparisons for presentation
Predicting protein structures and RNA structures
Doing phylogenetic analysis

With an Internet connection and Bioinformatics For Dummies, you'll discover how to peruse databases that contain virtually everything known about human biology. It's like having access to the world's largest lab, right from your desk. This book is your lab assistant – one that never takes a day off, never argues when you ask it for help, and won't demand a benefits package.

Customer Reviews:

Using the free software on internet sites to help your research.......2007-03-14

The first chapter is a short review of DNA and RNA sequences, amino acids, and protein. The other chapters teach you to use the free software found on the Internet to work with your research. Information is also given which helps explain some biochemicals. My skills are in Software Development using C++ language, and I need more information on biochemicals to understand the problems and to develop algorithms to solve them.
My only criticism is that I would like the book to give more biochemical theory before taking up the subject of Internet software.
Overall, this is a good beginner's book on biochemistry.

Good.......2007-02-16

I am a couple years into a PhD in bioinformatics, but this is the book I started with. I knew some biology and some computer science, but I still found a lot of the databases, etc. confusing and the field has a decided lack of simplified documentation (though it is getting better).

Of course, bioinformatics is a pretty broad topic and no book could possibly cover everything.

If you do not know any biology at all you probably should also get a basic text on genetics/molecular biology (or read thema at the NCBI web site books section for free). You don't need anything in depth to read the dummies book, just at the level of an introductory biology book. Hint: DNA to RNA, RNA to Protein. And you want to know why proteins are similar because proteins with similar amino acid sequences often have similar chemical properties and therefore similar functions, so if you know what one protein does you can guess what a protein like it probably does.
:-)

And despite the name of the book the authors are REAL bioinformaticists (T-Coffee rocks!)

Yes, It's Really Written at the For Dummies Level........2007-01-18

This book kind of blew me away. Bioinformatics is such a big word.

Then in the second chapter they tell you 'How Most People Use Bioinformatics.' And all of a sudden they have you on line to the National Library of Medicine at the National Institute of Health. They have you looking at protein sequences, and you even understand what they are saying.

This is a 'For Dummies' book. It is written in their traditional style, assuming that you know very little -- well to be sure they say they are making the assumption that 'You likely have a background in molecular biology. If you don't - or if you need to brush up on your molecular biology - Chapter 1 gives you a brief overview of the basics.'

I found that the first few chapters went down pretty easily. By part IV it had gone further than I wanted to go, and I quit reading.

BUT if I were going to be taking a course in bioinformatics, or even thinking about taking such a course, or just looking at a degree in biology, I'd spend a week or two getting around this book. It's written a hell of a lot better than any text you're likely to get assigned, and at its price it's quite a deal.

Great introductory text.......2006-09-20

This is an excellent introduction to Bioinformatics. It does assume some very basic knowledge of biology- perhaps a couple of paragraphs could help the total newbies.

Have you noticed that reviews of bioinformatics books tend to follow certain patterns? The Computer Scientists and mathematicians complain that there is not enough detail about the algorithms, the biologists complain that they could not get through the math, and everyone complains that there is not enough detail about their favorite programs! Let us face the fact that this is a very broad field, and most people that want to learn about it will never design algorithms.

great beginner.......2005-12-16

In spite of the title (I don't know many dummies interested in multiple sequence alignments) this reference is written by experts in the field of bioinformatics and is very accessable for the beginner. I purchased this book as a beginning graduate student so that I could learn which programs to use to compare amino acid and nucleic acid sequences as well as prepare them for publication and this book was perfect for this end. This text doesn't delve into the algorithms or much theory (which is learned through practice and other sources), nevertheless, I recommend this for the researcher for a crash course or quick reference. This book really helped me get my feet wet in this area (and recently publish a nice alignment) and will certainly reduce my workload next semester for my bioinformatics course!

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Biology Data and Resource Book
Jim Hawes , Peter Macinnis , Rex Meyer , and Peter Stanbury
Manufacturer: Learning Links
ProductGroup: Book
Binding: Paperback

General | Education | Nonfiction | Subjects | Books

Book Description

Recorded history is a finely-woven magic fabric of intricate lies about events predating the sixteenth century. There is not a single piece of evidence that can be reliably and independently traced back earlier than the eleventh century. This book details events that are substantiated by hard facts and logic, and validated by new astronomical research and statistical analysis of ancient sources.

Customer Reviews:

Calculations are only as good as your numbers.......2007-08-03

Yes, we can all agree that mainstream history is nearly 100% BS due to politics, economics, ego, problems with dating techniques, and various conspiracies. Agreed. But, I've been researching the distinct possibility that human history (in terms of civilizations) are much more ancient than we've been told, so coming across this book was very interesting to me. I wondered how Fomenko could be wrong (if at all) because he is very persuasive in his presentations. Then it dawned on me. If at previous times in prehistory, due to the various catastrophies that are well documented (comets, asteroids, planetary disruptions, plasma discharge, pole reversals, etc) the Earth was in a different position in relation to the sun, different tilt on its axis, different orbit, different rotation (in terms of velocity and DIRECTION), and the continents were in different positions, then would this not cause the ancients to see the sky (constellations) differently? In other words, is Fomenko making erronious assumptions about the physics of the Earth in pre-history, which then corrupt his data with regards to dating the relevant astrology? The last event to seriously disrupt our planet occured roughly 3500 years ago, according to other good researchers, so is it possible Fomenko has been confused by this? The vastly different physics of our planet in the not so distant past may explain this confusion, which is not to say the "mainstream" version of history is correct; on the contrary. I am not an expert in these fields, but wanted to see if this idea could spark discussion.

Pants on fire?.......2007-07-19

Will people ever read before spamming? Yes, Jesuits could not rewrite world history alone, they had help. Anyway, Dr Prof Acad A.Fomenko does not point to jesuits as the driving force of world wide history manipulation in published volumes 1,2,3;, actually he barely mentions the poor devils. Check it with 'Search inside' feature, please. China is rarely mentioned either, in fact, Dr Fomenko is completely eurocentric. Right, his theory contradicts all mainstream schools of history, because in their actual state they are all built on blatantly erroneus chronology. You don't need a mysterious cabal (conspiracy) to falsify history, the falsification is its modus operandi. It is inherent to history(ians) to falsify (distort) events, as it is inherent to humans to boast as it is inherent to power (authority) to legimize itself by referrring to glorious past made to its own order. Dr Prof Fomenko and team have identified scores of instances of such manipulation in Russian, European, etc.. history, and delivered valid statistical proof thereof. His own 'reconstruction' is completely another story. Forget c14 as a valid method of dating. W.Libby has initially discovered a brilliant method of INDEPENDENT dating. Too bad, c14 method has become a joke after a forced marrige with dendrochronology with consensual chronological scale inbuilt. Radiocarbon method can't stand blind tests, but is so very productive as a rubberstamp.

Accepted History & Chronology Must Be Changed. .......2007-04-09

There is no doubt that history as most know it is a sham, & institution's version of History both University & Church is fradulent & inaccurate. Everything was established with an agenda, The real "Dark Ages" are now when we have access to incredible amounts of information past authorities & more important 'common folk' didn't have but our institutions & educators are slow to evolve because of what has ignorantly & arrogantly been taught for too long. This is on many subjects not just Chronology.

For anyone to question "Why would a Mathematician have anything credible to say of History?" The answer is from Dr. Fomenko's preface in the book: "It would be worthwhile to remind the reader that in the XVI-XVII century Chronology was considered to be a subdivision of Mathematics." These volumes could possibly be some of the most important works to date & should be read by everyone with an interest in History, especially professors & educators who have a duty to the public. I have read both books & must say that 'Chronology 1' has some very eye opening & revolutionary information. Even if these volumes are part true the implications are profound & opens the doors to further investigations & questions which must be done. I speak several different lanquages & must say the logic Dr. Fomenko uses with "inflection" of words & words being read from left to right in one region & right to left in another then written backwards, the removal of vowels & get down to basics of words, or different cities & locations having the same name etc. is correct. Vowel usage has always been optional & varied, actually complicating linquistics & study. The first thing one has to understand is that words never had a fixed spelling in history like we do now, the spelling of words was mutable & regional, as well as names & titles of people were vast, varied & changed, NOTHING WAS FIXED or understood linear. Matters of Life & Death as well as financial profiteering yesterday & today were & are made with ignorant, illogical & conspiratorial views of history & reality, it's time people get closer to the Truth & society collectively grow up.

Very Interesting.......2007-03-07

It is a good proposal and I believe it will mature into something even better in the future. I think it deserves to be read.

History as Science Fiction.......2007-01-10

Anatoly Fomenko has written a very intriguing book, full of pictures, charts, and computer 'proof' of his thesis: backwards of AD900 we don't really know what happened or when. Between AD900 and AD1600 there is more certainty, but there is still a lot of fuzzy ground, and things don't get reliable until we get past the 1600's where the printing press made it very difficult for the perpetrators of this timeline manipulation to change anything that had been committed to print. The Dark Ages did not happen. Books were burned for a reason. One organization has doubled the actual length of its existence by expanding the real chronology. Read why.

I had always wondered why Christ died about AD33 and yet men waited until the 11th century to form the Knights Templar, the Cathars, etc and go after the Holy Land by force. Why the 1000 year gap? Turns out there wasn't more than a 10-12 year gap and he proves it using astronomy. This also implies that the planet is not as old as we have been told, and current Christian and other creationist scientists are already championing that idea without being aware of Fomenko's book. The two groups, creationist scientists and the Russian mathematical analysts corroborate each other. Fascinating.

Of course, all this flies in the face of what we have been told traditionally is the 'proper' chronology of western civilization, and most readers will experience 'cognitive dissonance' in reading this book. It means that our history going backwards from AD1600 becomes progressively more incorrect and unreliable until it cannot be trusted at all... in the space of 700-800 years.

Naturally, the curious, open-minded reader will want to know WHO did this, WHY, and did any of the events we think of as really ancient ever happen?
Dr. Fomenko is a respected scientist/mathematician at Moscow State University who has already answered these questions to the satisfaction of his initially skeptical colleagues. Most of them are now believers, a few still refuse to believe (the usual diehards), and of course the western press has ignored Fomenko's work -- for obvious reasons when you read the book. The ones who perpetrated this chronology ruse have a lot to answer for. They are still with us. That's why this book is a well-kept secret.

I gave the book a 4-star rating because I was unable to check out some of his claims; those I checked were as he said. But if even 1/3 of his claims are true, this punches a big hole in what we think is our history, the meaning of western civilization, our educational process (for repeating the ruse as gospel), and the trustworthiness of the organization that perpetrated this ruse, well-intentioned or not.

This book relates to current research into a Young Earth paradigm, to John Keel's discoveries about our planet, and Fr Malachi Martin's insights (in his now out-of-print books). We are indeed sheep who are manipulated and kept ignorant -- for a reason. While knowing what these men have to say may be the "booby prize" (as in: 'what can you do with this knowledge?'), it will provide interesting reading. Didn't someone say: "...and the Truth will set you free."?? For you to judge if this book contains the truth.

Average customer rating:

Excellent!

New Views on an Old Planet
Tjeerd H. van Andel
Manufacturer: Cambridge University Press
ProductGroup: Book
Binding: Paperback

General | Earth Sciences | Science | Subjects | Books

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ASIN: 0521447550

Book Description

Earth Science is history, and because the earth is changing every day, earth history is being added every moment. Professor van Andel's now famous book on earth history interweaves three main themes: the evolution of the solid earth; the history of oceans and atmospheres; and the evolution of life. In the decade since this award-winning book was first published, much new information has been learned and confirmed, and Dr. van Andel draws on this wealth of knowledge to thoroughly revise and update the text. There is a new chapter on how we can improve our grasp on geological time and, mindful of the current interest in global change, new sections describe the greenhouse effect and address its possible future ramifications. In prose that is both concise and compelling and with a glossary and suggestions for further reading New Views on an Old Planet: A History of Global Change, makes earth history appealing to the general reader .

Customer Reviews:

Excellent!.......1999-10-11

Careful and clear presentation of continental drift, tectonic plate theory and related subjects. Written by an expert in the field for the intelligent and inquisitive layperson.

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New Views on an Old Planet
Tjeed H. Van Andel
Manufacturer: Cambridge
ProductGroup: Book
Binding: Hardcover
ASIN: B000WKXFFA

New Views on an Old Planet: History of Global Change

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New Views on an Old Planet: History of Global Change
Tjeerd H. Van Andel
Manufacturer: Publisher Unknown
ProductGroup: Book
Binding: Paperback
ASIN: B000VL3PVY

New Views on an Old Planet:Continental Drift and the History of the Earth 1ed

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New Views on an Old Planet:Continental Drift and the History of the Earth 1ed
T. van Andel
Manufacturer: Cambridge University Press
ProductGroup: Book
Binding: Paperback

General | Earth Sciences | Science | Subjects | Books

Book Description

In this book, Professor van Andel, a distinguished earth scientist, interweaves the major strands of change taking place on the earth - continental drift, climatic fluctuations and the progression of life - into a carefully constructed historical account of the evolution of the earth. He does this against a backdrop of evolving ideas; the outlook of geologists everywhere has been profoundly altered by the adoption of the theory of continental drift, and with this change have come wholly new interpretations of earth history. In a unique manner, blending information with illustrations and through experiments, the author elaborates on such topics as the rock record, the mechanisms of climatic change, the process of plate tectonics and continental drift, the progression of life and its numerous catastrophic setbacks.

New Views On an Old Planet Continental Drift and the History of The Earth

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New Views On an Old Planet Continental Drift and the History of The Earth
Tjeerd H. van Andel
Manufacturer: Cambridge University Press
ProductGroup: Book
Binding: Hardcover
ASIN: B000PRP4F4

Book Description

Photochromic glasses are among the most widespread types of glasses, due largely to their popular use in sunglasses. These glasses are used not only in sunglasses, but also in various opto-electronic devices that have been developed and produced throughout the world. Until now, information about photochromic glasses has been widely dispersed in the literature, much of which was published in Russian and therefore of limited accessibility to the Western world. Physics and Chemistry of Photochromic Glasses brings together the combined knowledge and understanding of photochromic glasses from these publications. Coverage includes the structure, optical properties, coloration and bleaching mechanisms, technology, and metrology of these interesting materials.

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